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Scientific Publications
Spatially-Aware Clustering of Ion Images in Mass Spectrometry Imaging Data Using Deep Learning
Wanqiu Zhang 1 , 2 , Marc Claesen 2 , 1 , Thomas Moerman 2 , Reid M. Groseclose 3 , Etienne Waelkens 4 , Bart De Moor 1 , Nico Verbeeck 2 , 1
Analytical and Bioanalytical Chemistry :, 2021
1: STADIUS Center for Dynamical Systems, Signal Processing, and Data Analytics, Department of Electrical Engineering (ESAT), KU Leuven, Leuven, Belgium ; 2: Aspect Analytics NV, Genk, Belgium ; 3: Bioimaging, GlaxoSmithKline, Collegeville, United States ; 4: Department of Cellular and Molecular Medicine, KU Leuven, 3000 Leuven, Belgium
Metabolite Explorer: A Software Tool for Targeted Analysis of Mass Spectrometry Imaging Data
Thomas Moerman 1 , Michael Becker 2 , Nico Verbeeck 1 , Marc Claesen 1
ASMS 2020 Reboot (June 2020), Online (Texas)
1: Aspect Analytics NV, Genk, Belgium ; 2: Boehringer Ingelheim Pharma GmbH, Biberach a.d. Riss, Germany
Spatially-Aware Clustering of Ion Images in Mass Spectrometry Imaging Data Through the Use of Pre-trained Neural Networks
Wanqiu Zhang 1 , 2 , Nico Verbeeck 1 , 2 , Thomas Moerman 2 , Etienne Waelkens 3 , Marc Claesen 1 , 2 , Bart De Moor 1
ASMS 2020 Reboot (June 2020), Online (Texas)
1: KU Leuven, ESAT-STADIUS, Leuven, Belgium ; 2: Aspect Analytics NV, Genk, Belgium ; 3: KU Leuven, Dept. of Cellular and Molecular Medicine, Leuven, Belgium
Rapid Bioinformatics Prototyping Based on a Public Application Programming Interface
J. H. Kobarg 1 , N. Verbeeck 2 , D. Lachmund 3 , J. von Schroeder 3 , S.O. Deininger 1 , T. Moerman 2 , S. Schiffler 1 , J. Singe 1 , D. Trede 1 , M. Claesen 2 , T. Boskamp 1 , 3
Ourcon VII (October 2019), Saint-Malo, France
1: SCiLS / Bruker Daltonic GmbH, Bremen, Germany ; 2: Aspect Analytics NV, Genk, Belgium ; 3: University of Bremen, Center for Industrial Mathematics, Bremen, Germany
Unsupervised Machine Learning for Exploratory Data Analysis in Imaging Mass Spectrometry
Nico Verbeeck 1 , 2 , 3 , Richard M. Caprioli 4 , 5 , 6 , 7 , 8 , Raf Van de Plas 1 , 4 , 5
Mass Spectrometry Reviews 39:245-291, 2020
1: Delft Center for Systems and Control, Delft University of Technology ‐ TU Delft, Delft, The Netherlands ; 2: Aspect Analytics NV, Genk, Belgium ; 3: STADIUS Center for Dynamical Systems, Signal Processing, and Data Analytics, Department of Electrical Engineering (ESAT), KU Leuven, Leuven, Belgium ; 4: Mass Spectrometry Research Center, Vanderbilt University, Nashville, TN ; 5: Department of Biochemistry, Vanderbilt University, Nashville, TN ; 6: Department of Chemistry, Vanderbilt University, Nashville, TN ; 7: Department of Pharmacology, Vanderbilt University, Nashville, TN ; 8: Department of Medicine, Vanderbilt University, Nashville, TN
Evaluation of Distance Metrics and Spatial Autocorrelation in Uniform Manifold Approximation and Projection Applied to Mass Spectrometry Imaging Data
Tina Smets 1 , Nico Verbeeck 1 , 2 , Marc Claesen 1 , 2 , Arndt Asperger 3 , Gerard Griffioen 4 , Thomas Tousseyn 5 , Wim Waelput 6 , Etienne Waelkens 7 , Bart De Moor 1
Analytical Chemistry 91:5706-5714, 2019
1: STADIUS Center for Dynamical Systems, Signal Processing, and Data Analytics, Department of Electrical Engineering (ESAT), KU Leuven, 3001 Leuven, Belgium ; 2: Aspect Analytics NV, C-mine 12, 3600 Genk, Belgium ; 3: Bruker Daltonik GmbH, Fahrenheitstrasse 4, 28359 Bremen, Germany ; 4: reMYND, Bio-Incubator, Gaston Geenslaan 1, 3000 Leuven, Belgium ; 5: Department of Pathology, University Hospitals KU Leuven, 3001 Leuven, Belgium ; 6: Department of Pathology, UZ-Brussel, 1000 Brussels, Belgium ; 7: Department of Cellular and Molecular Medicine, KU Leuven, 3000 Leuven, Belgium
